library(emmeans)
library(multcomp)
library(glmmTMB)
library(DHARMa)
library(FSA)
library(car)
library(inti)
library(glmmTMB)
source("https://inkaverse.com/setup.r")Project directory: C:/Users/Sebastian/INIA EE EL CHIRA/GIT/prochira_papa
CPU cores detected: 12
CPU cores in use: 9
─ Session info ───────────────────────────────────────────────────────────────
setting value
version R version 4.5.2 (2025-10-31 ucrt)
os Windows 11 x64 (build 26100)
system x86_64, mingw32
ui RTerm
language (EN)
collate Spanish_Peru.utf8
ctype Spanish_Peru.utf8
tz America/Lima
date 2025-11-28
pandoc 3.6.3 @ C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
quarto NA @ C:\\PROGRA~1\\Quarto\\bin\\quarto.exe
─ Packages ───────────────────────────────────────────────────────────────────
! package * version date (UTC) lib source
abind 1.4-8 2024-09-12 [1] CRAN (R 4.5.0)
agricolae 1.3-7 2023-10-22 [1] CRAN (R 4.5.1)
AlgDesign 1.2.1.2 2025-04-06 [1] CRAN (R 4.5.0)
askpass 1.2.1 2024-10-04 [1] CRAN (R 4.5.1)
boot 1.3-32 2025-08-29 [1] CRAN (R 4.5.2)
cachem 1.1.0 2024-05-16 [1] CRAN (R 4.5.1)
car * 3.1-3 2024-09-27 [1] CRAN (R 4.5.1)
carData * 3.0-5 2022-01-06 [1] CRAN (R 4.5.1)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.5.1)
cli 3.6.5 2025-04-23 [1] CRAN (R 4.5.1)
cluster 2.1.8.1 2025-03-12 [2] CRAN (R 4.5.2)
codetools 0.2-20 2024-03-31 [2] CRAN (R 4.5.2)
cowplot * 1.2.0 2025-07-07 [1] CRAN (R 4.5.1)
curl 7.0.0 2025-08-19 [1] CRAN (R 4.5.1)
devtools * 2.4.6 2025-10-03 [1] CRAN (R 4.5.2)
DHARMa * 0.4.7 2024-10-18 [1] CRAN (R 4.5.2)
digest 0.6.39 2025-11-19 [1] CRAN (R 4.5.1)
dplyr * 1.1.4 2023-11-17 [1] CRAN (R 4.5.1)
DT 0.34.0 2025-09-02 [1] CRAN (R 4.5.1)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.5.1)
emmeans * 2.0.0 2025-10-29 [1] CRAN (R 4.5.2)
estimability 1.5.1 2024-05-12 [1] CRAN (R 4.5.1)
evaluate 1.0.5 2025-08-27 [1] CRAN (R 4.5.1)
FactoMineR * 2.12 2025-07-23 [1] CRAN (R 4.5.1)
farver 2.1.2 2024-05-13 [1] CRAN (R 4.5.1)
fastmap 1.2.0 2024-05-15 [1] CRAN (R 4.5.1)
flashClust 1.01-2 2012-08-21 [1] CRAN (R 4.5.0)
forcats * 1.0.1 2025-09-25 [1] CRAN (R 4.5.2)
Formula 1.2-5 2023-02-24 [1] CRAN (R 4.5.0)
fs 1.6.6 2025-04-12 [1] CRAN (R 4.5.1)
FSA * 0.10.0 2025-05-06 [1] CRAN (R 4.5.1)
gargle 1.6.0 2025-09-03 [1] CRAN (R 4.5.1)
generics 0.1.4 2025-05-09 [1] CRAN (R 4.5.1)
ggplot2 * 4.0.1 2025-11-14 [1] CRAN (R 4.5.2)
ggrepel 0.9.6 2024-09-07 [1] CRAN (R 4.5.1)
glmmTMB * 1.1.13 2025-10-09 [1] CRAN (R 4.5.2)
glue 1.8.0 2024-09-30 [1] CRAN (R 4.5.1)
googledrive * 2.1.2 2025-09-10 [1] CRAN (R 4.5.1)
googlesheets4 * 1.1.2 2025-09-03 [1] CRAN (R 4.5.1)
gtable 0.3.6 2024-10-25 [1] CRAN (R 4.5.1)
hms 1.1.4 2025-10-17 [1] CRAN (R 4.5.2)
htmltools 0.5.8.1 2024-04-04 [1] CRAN (R 4.5.1)
htmlwidgets 1.6.4 2023-12-06 [1] CRAN (R 4.5.1)
httpuv 1.6.16 2025-04-16 [1] CRAN (R 4.5.1)
httr 1.4.7 2023-08-15 [1] CRAN (R 4.5.1)
huito * 0.2.6 2025-10-18 [1] CRAN (R 4.5.2)
inti * 0.6.9 2025-11-27 [1] Github (flavjack/inti@c2d376f)
jsonlite 2.0.0 2025-03-27 [1] CRAN (R 4.5.1)
knitr * 1.50 2025-03-16 [1] CRAN (R 4.5.1)
later 1.4.4 2025-08-27 [1] CRAN (R 4.5.1)
lattice 0.22-7 2025-04-02 [2] CRAN (R 4.5.2)
leaps 3.2 2024-06-10 [1] CRAN (R 4.5.1)
lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.5.1)
lme4 * 1.1-37 2025-03-26 [1] CRAN (R 4.5.1)
lubridate * 1.9.4 2024-12-08 [1] CRAN (R 4.5.1)
magick * 2.9.0 2025-09-08 [1] CRAN (R 4.5.2)
magrittr 2.0.4 2025-09-12 [1] CRAN (R 4.5.1)
MASS * 7.3-65 2025-02-28 [2] CRAN (R 4.5.2)
Matrix * 1.7-4 2025-08-28 [1] CRAN (R 4.5.2)
memoise 2.0.1 2021-11-26 [1] CRAN (R 4.5.1)
mgcv 1.9-4 2025-11-07 [1] CRAN (R 4.5.2)
mime 0.13 2025-03-17 [1] CRAN (R 4.5.0)
minqa 1.2.8 2024-08-17 [1] CRAN (R 4.5.1)
mnormt 2.1.1 2022-09-26 [1] CRAN (R 4.5.0)
multcomp * 1.4-29 2025-10-20 [1] CRAN (R 4.5.2)
multcompView 0.1-10 2024-03-08 [1] CRAN (R 4.5.1)
mvtnorm * 1.3-3 2025-01-10 [1] CRAN (R 4.5.1)
nlme 3.1-168 2025-03-31 [2] CRAN (R 4.5.2)
nloptr 2.2.1 2025-03-17 [1] CRAN (R 4.5.1)
numDeriv 2016.8-1.1 2019-06-06 [1] CRAN (R 4.5.0)
openssl 2.3.4 2025-09-30 [1] CRAN (R 4.5.1)
otel 0.2.0 2025-08-29 [1] CRAN (R 4.5.2)
pillar 1.11.1 2025-09-17 [1] CRAN (R 4.5.1)
pkgbuild 1.4.8 2025-05-26 [1] CRAN (R 4.5.1)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.5.1)
pkgload 1.4.1 2025-09-23 [1] CRAN (R 4.5.2)
promises 1.5.0 2025-11-01 [1] CRAN (R 4.5.2)
psych * 2.5.6 2025-06-23 [1] CRAN (R 4.5.1)
purrr * 1.2.0 2025-11-04 [1] CRAN (R 4.5.2)
R6 2.6.1 2025-02-15 [1] CRAN (R 4.5.1)
rappdirs 0.3.3 2021-01-31 [1] CRAN (R 4.5.1)
rbibutils 2.4 2025-11-07 [1] CRAN (R 4.5.2)
RColorBrewer 1.1-3 2022-04-03 [1] CRAN (R 4.5.0)
Rcpp 1.1.0 2025-07-02 [1] CRAN (R 4.5.1)
Rdpack 2.6.4 2025-04-09 [1] CRAN (R 4.5.1)
readr * 2.1.6 2025-11-14 [1] CRAN (R 4.5.2)
reformulas 0.4.2 2025-10-28 [1] CRAN (R 4.5.2)
remotes 2.5.0 2024-03-17 [1] CRAN (R 4.5.1)
RhpcBLASctl * 0.23-42 2023-02-11 [1] CRAN (R 4.5.0)
rlang 1.1.6 2025-04-11 [1] CRAN (R 4.5.1)
rmarkdown 2.30 2025-09-28 [1] CRAN (R 4.5.1)
rstudioapi 0.17.1 2024-10-22 [1] CRAN (R 4.5.1)
S7 0.2.1 2025-11-14 [1] CRAN (R 4.5.2)
sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.5.1)
scales 1.4.0 2025-04-24 [1] CRAN (R 4.5.1)
scatterplot3d 0.3-44 2023-05-05 [1] CRAN (R 4.5.0)
sessioninfo * 1.2.3 2025-02-05 [1] CRAN (R 4.5.1)
shiny * 1.11.1 2025-07-03 [1] CRAN (R 4.5.1)
showtext 0.9-7 2024-03-02 [1] CRAN (R 4.5.1)
showtextdb 3.0 2020-06-04 [1] CRAN (R 4.5.1)
stringi 1.8.7 2025-03-27 [1] CRAN (R 4.5.0)
stringr * 1.6.0 2025-11-04 [1] CRAN (R 4.5.2)
survival * 3.8-3 2024-12-17 [2] CRAN (R 4.5.2)
sysfonts 0.8.9 2024-03-02 [1] CRAN (R 4.5.1)
TH.data * 1.1-5 2025-11-17 [1] CRAN (R 4.5.1)
tibble * 3.3.0 2025-06-08 [1] CRAN (R 4.5.1)
tidyr * 1.3.1 2024-01-24 [1] CRAN (R 4.5.1)
tidyselect 1.2.1 2024-03-11 [1] CRAN (R 4.5.1)
tidyverse * 2.0.0 2023-02-22 [1] CRAN (R 4.5.1)
timechange 0.3.0 2024-01-18 [1] CRAN (R 4.5.1)
D TMB 1.9.18 2025-10-13 [1] CRAN (R 4.5.2)
tzdb 0.5.0 2025-03-15 [1] CRAN (R 4.5.1)
usethis * 3.2.1 2025-09-06 [1] CRAN (R 4.5.2)
vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.5.1)
withr 3.0.2 2024-10-28 [1] CRAN (R 4.5.1)
xfun 0.54 2025-10-30 [1] CRAN (R 4.5.2)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.5.1)
yaml 2.3.10 2024-07-26 [1] CRAN (R 4.5.0)
zoo 1.8-14 2025-04-10 [1] CRAN (R 4.5.1)
[1] C:/Users/Sebastian/AppData/Local/R/win-library/4.5
[2] C:/Program Files/R/R-4.5.2/library
* ── Packages attached to the search path.
D ── DLL MD5 mismatch, broken installation.
──────────────────────────────────────────────────────────────────────────────
cat("Project: ", getwd(), "\n")Project: C:/Users/Sebastian/INIA EE EL CHIRA/GIT/prochira_papa
session_info()─ Session info ───────────────────────────────────────────────────────────────
setting value
version R version 4.5.2 (2025-10-31 ucrt)
os Windows 11 x64 (build 26100)
system x86_64, mingw32
ui RTerm
language (EN)
collate Spanish_Peru.utf8
ctype Spanish_Peru.utf8
tz America/Lima
date 2025-11-28
pandoc 3.6.3 @ C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
quarto NA @ C:\\PROGRA~1\\Quarto\\bin\\quarto.exe
─ Packages ───────────────────────────────────────────────────────────────────
! package * version date (UTC) lib source
abind 1.4-8 2024-09-12 [1] CRAN (R 4.5.0)
agricolae 1.3-7 2023-10-22 [1] CRAN (R 4.5.1)
AlgDesign 1.2.1.2 2025-04-06 [1] CRAN (R 4.5.0)
askpass 1.2.1 2024-10-04 [1] CRAN (R 4.5.1)
boot 1.3-32 2025-08-29 [1] CRAN (R 4.5.2)
cachem 1.1.0 2024-05-16 [1] CRAN (R 4.5.1)
car * 3.1-3 2024-09-27 [1] CRAN (R 4.5.1)
carData * 3.0-5 2022-01-06 [1] CRAN (R 4.5.1)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.5.1)
cli 3.6.5 2025-04-23 [1] CRAN (R 4.5.1)
cluster 2.1.8.1 2025-03-12 [2] CRAN (R 4.5.2)
codetools 0.2-20 2024-03-31 [2] CRAN (R 4.5.2)
cowplot * 1.2.0 2025-07-07 [1] CRAN (R 4.5.1)
curl 7.0.0 2025-08-19 [1] CRAN (R 4.5.1)
devtools * 2.4.6 2025-10-03 [1] CRAN (R 4.5.2)
DHARMa * 0.4.7 2024-10-18 [1] CRAN (R 4.5.2)
digest 0.6.39 2025-11-19 [1] CRAN (R 4.5.1)
dplyr * 1.1.4 2023-11-17 [1] CRAN (R 4.5.1)
DT 0.34.0 2025-09-02 [1] CRAN (R 4.5.1)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.5.1)
emmeans * 2.0.0 2025-10-29 [1] CRAN (R 4.5.2)
estimability 1.5.1 2024-05-12 [1] CRAN (R 4.5.1)
evaluate 1.0.5 2025-08-27 [1] CRAN (R 4.5.1)
FactoMineR * 2.12 2025-07-23 [1] CRAN (R 4.5.1)
farver 2.1.2 2024-05-13 [1] CRAN (R 4.5.1)
fastmap 1.2.0 2024-05-15 [1] CRAN (R 4.5.1)
flashClust 1.01-2 2012-08-21 [1] CRAN (R 4.5.0)
forcats * 1.0.1 2025-09-25 [1] CRAN (R 4.5.2)
Formula 1.2-5 2023-02-24 [1] CRAN (R 4.5.0)
fs 1.6.6 2025-04-12 [1] CRAN (R 4.5.1)
FSA * 0.10.0 2025-05-06 [1] CRAN (R 4.5.1)
gargle 1.6.0 2025-09-03 [1] CRAN (R 4.5.1)
generics 0.1.4 2025-05-09 [1] CRAN (R 4.5.1)
ggplot2 * 4.0.1 2025-11-14 [1] CRAN (R 4.5.2)
ggrepel 0.9.6 2024-09-07 [1] CRAN (R 4.5.1)
glmmTMB * 1.1.13 2025-10-09 [1] CRAN (R 4.5.2)
glue 1.8.0 2024-09-30 [1] CRAN (R 4.5.1)
googledrive * 2.1.2 2025-09-10 [1] CRAN (R 4.5.1)
googlesheets4 * 1.1.2 2025-09-03 [1] CRAN (R 4.5.1)
gtable 0.3.6 2024-10-25 [1] CRAN (R 4.5.1)
hms 1.1.4 2025-10-17 [1] CRAN (R 4.5.2)
htmltools 0.5.8.1 2024-04-04 [1] CRAN (R 4.5.1)
htmlwidgets 1.6.4 2023-12-06 [1] CRAN (R 4.5.1)
httpuv 1.6.16 2025-04-16 [1] CRAN (R 4.5.1)
httr 1.4.7 2023-08-15 [1] CRAN (R 4.5.1)
huito * 0.2.6 2025-10-18 [1] CRAN (R 4.5.2)
inti * 0.6.9 2025-11-27 [1] Github (flavjack/inti@c2d376f)
jsonlite 2.0.0 2025-03-27 [1] CRAN (R 4.5.1)
knitr * 1.50 2025-03-16 [1] CRAN (R 4.5.1)
later 1.4.4 2025-08-27 [1] CRAN (R 4.5.1)
lattice 0.22-7 2025-04-02 [2] CRAN (R 4.5.2)
leaps 3.2 2024-06-10 [1] CRAN (R 4.5.1)
lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.5.1)
lme4 * 1.1-37 2025-03-26 [1] CRAN (R 4.5.1)
lubridate * 1.9.4 2024-12-08 [1] CRAN (R 4.5.1)
magick * 2.9.0 2025-09-08 [1] CRAN (R 4.5.2)
magrittr 2.0.4 2025-09-12 [1] CRAN (R 4.5.1)
MASS * 7.3-65 2025-02-28 [2] CRAN (R 4.5.2)
Matrix * 1.7-4 2025-08-28 [1] CRAN (R 4.5.2)
memoise 2.0.1 2021-11-26 [1] CRAN (R 4.5.1)
mgcv 1.9-4 2025-11-07 [1] CRAN (R 4.5.2)
mime 0.13 2025-03-17 [1] CRAN (R 4.5.0)
minqa 1.2.8 2024-08-17 [1] CRAN (R 4.5.1)
mnormt 2.1.1 2022-09-26 [1] CRAN (R 4.5.0)
multcomp * 1.4-29 2025-10-20 [1] CRAN (R 4.5.2)
multcompView 0.1-10 2024-03-08 [1] CRAN (R 4.5.1)
mvtnorm * 1.3-3 2025-01-10 [1] CRAN (R 4.5.1)
nlme 3.1-168 2025-03-31 [2] CRAN (R 4.5.2)
nloptr 2.2.1 2025-03-17 [1] CRAN (R 4.5.1)
numDeriv 2016.8-1.1 2019-06-06 [1] CRAN (R 4.5.0)
openssl 2.3.4 2025-09-30 [1] CRAN (R 4.5.1)
otel 0.2.0 2025-08-29 [1] CRAN (R 4.5.2)
pillar 1.11.1 2025-09-17 [1] CRAN (R 4.5.1)
pkgbuild 1.4.8 2025-05-26 [1] CRAN (R 4.5.1)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.5.1)
pkgload 1.4.1 2025-09-23 [1] CRAN (R 4.5.2)
promises 1.5.0 2025-11-01 [1] CRAN (R 4.5.2)
psych * 2.5.6 2025-06-23 [1] CRAN (R 4.5.1)
purrr * 1.2.0 2025-11-04 [1] CRAN (R 4.5.2)
R6 2.6.1 2025-02-15 [1] CRAN (R 4.5.1)
rappdirs 0.3.3 2021-01-31 [1] CRAN (R 4.5.1)
rbibutils 2.4 2025-11-07 [1] CRAN (R 4.5.2)
RColorBrewer 1.1-3 2022-04-03 [1] CRAN (R 4.5.0)
Rcpp 1.1.0 2025-07-02 [1] CRAN (R 4.5.1)
Rdpack 2.6.4 2025-04-09 [1] CRAN (R 4.5.1)
readr * 2.1.6 2025-11-14 [1] CRAN (R 4.5.2)
reformulas 0.4.2 2025-10-28 [1] CRAN (R 4.5.2)
remotes 2.5.0 2024-03-17 [1] CRAN (R 4.5.1)
RhpcBLASctl * 0.23-42 2023-02-11 [1] CRAN (R 4.5.0)
rlang 1.1.6 2025-04-11 [1] CRAN (R 4.5.1)
rmarkdown 2.30 2025-09-28 [1] CRAN (R 4.5.1)
rstudioapi 0.17.1 2024-10-22 [1] CRAN (R 4.5.1)
S7 0.2.1 2025-11-14 [1] CRAN (R 4.5.2)
sandwich 3.1-1 2024-09-15 [1] CRAN (R 4.5.1)
scales 1.4.0 2025-04-24 [1] CRAN (R 4.5.1)
scatterplot3d 0.3-44 2023-05-05 [1] CRAN (R 4.5.0)
sessioninfo * 1.2.3 2025-02-05 [1] CRAN (R 4.5.1)
shiny * 1.11.1 2025-07-03 [1] CRAN (R 4.5.1)
showtext 0.9-7 2024-03-02 [1] CRAN (R 4.5.1)
showtextdb 3.0 2020-06-04 [1] CRAN (R 4.5.1)
stringi 1.8.7 2025-03-27 [1] CRAN (R 4.5.0)
stringr * 1.6.0 2025-11-04 [1] CRAN (R 4.5.2)
survival * 3.8-3 2024-12-17 [2] CRAN (R 4.5.2)
sysfonts 0.8.9 2024-03-02 [1] CRAN (R 4.5.1)
TH.data * 1.1-5 2025-11-17 [1] CRAN (R 4.5.1)
tibble * 3.3.0 2025-06-08 [1] CRAN (R 4.5.1)
tidyr * 1.3.1 2024-01-24 [1] CRAN (R 4.5.1)
tidyselect 1.2.1 2024-03-11 [1] CRAN (R 4.5.1)
tidyverse * 2.0.0 2023-02-22 [1] CRAN (R 4.5.1)
timechange 0.3.0 2024-01-18 [1] CRAN (R 4.5.1)
D TMB 1.9.18 2025-10-13 [1] CRAN (R 4.5.2)
tzdb 0.5.0 2025-03-15 [1] CRAN (R 4.5.1)
usethis * 3.2.1 2025-09-06 [1] CRAN (R 4.5.2)
vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.5.1)
withr 3.0.2 2024-10-28 [1] CRAN (R 4.5.1)
xfun 0.54 2025-10-30 [1] CRAN (R 4.5.2)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.5.1)
yaml 2.3.10 2024-07-26 [1] CRAN (R 4.5.0)
zoo 1.8-14 2025-04-10 [1] CRAN (R 4.5.1)
[1] C:/Users/Sebastian/AppData/Local/R/win-library/4.5
[2] C:/Program Files/R/R-4.5.2/library
* ── Packages attached to the search path.
D ── DLL MD5 mismatch, broken installation.
──────────────────────────────────────────────────────────────────────────────